Package index • restoptr

Overview

Overview of the package.

restoptr-package restoptr: restoptr: Ecological Restoration Planning

Create and solve problems

Functions for creating new problems and solving them.

restopt_problem(): Restoration optimization problem

add_settings(): Add settings

solve(<RestoptProblem>): Solve a restoration optimization problem

get_metadata(): Restopt solution metadata

Objectives

Functions for setting an objective to a problem.

set_max_iic_objective(): Set an objective to maximize the integral index of connectivity

set_max_mesh_objective(): Set an objective to maximize effective mesh size

set_max_nb_pus_objective(): Set an objective to maximize the number of planning units

set_max_restore_objective(): Set an objective to maximize the amount restoration area.

set_min_nb_patches_objective(): Set an objective to minimize the number of patches (habitat + restored areas)

set_min_nb_pus_objective(): Set an objective to minimize the number of planning units

set_min_restore_objective(): Set an objective to minimize the amount restoration area.

set_no_objective(): Configure the solver to only satisfy the constraints, without optimization objective

Constraints

Functions for adding constraints to a problem.

add_available_areas_constraint(): Add available areas constraint

add_compactness_constraint(): Add constraint to limit compactness

add_components_constraint(): Add constraint to limit the number of connected components

add_connected_constraint(): Add constraint to ensure that the selected planning units for restoration are connected.

add_locked_out_constraint(): Add locked out constraint

add_min_iic_constraint(): Add constraint to enforce a minimum integral index of connectivity (IIC) value

add_min_mesh_constraint(): Add constraint to enforce a minimum effective mesh size (MESH) value

add_nb_patches_constraint(): Add constraint to limit the number of patches (habitat + restoration)

add_no_new_patch_constraint(): Add constraint to forbid the creation of new patches.

add_restorable_constraint(): Add constraint to specify the available amount of surface for restoration

Miscellaneous functions

Assorted functions distributed with the package.

is_java_available(): Is Java is available?

invert_vector(): Invert a vector layer according to the extent of a restopt problem.

preprocess_input(): Restopr input preprocessing function.

area_to_nb_cells(): Compute the number of cells corresponding to a given area.

cell_area(): Compute the area of a cell

cell_width(): Compute the width of a cell

nb_cell_to_area(): Compute the area corresponding to a given number of cells.

Class definitions and methods

Documentation for data structures and functions to interact with them.

restopt_problem(): Restoration optimization problem

restopt_solution(): Restopt solution

print(<RestoptProblem>): Print a restoration optimization problem

get_aggregation_factor(): Retrieve the aggregation factor of a restopt problem.

get_aggregation_method(): Retrieve the aggregation method of a restopt problem.

get_cell_area(): Retrieve the aggregated cell area of a restopt problem.

get_constraints(): Retrieve the constraints of a restopt problem.

get_existing_habitat(): Retrieve the existing (i.e. aggregated) habitat data.

get_habitat_threshold(): Retrieve the habitat threshold parameter of a restopt problem.

get_locked_out_areas(): Retrieve the locked out areas of a restopt problem.

get_metadata(): Restopt solution metadata

get_objective(): Retrieve the optimization objective of a restopt problem.

get_original_habitat(): Retrieve the original (i.e. not aggregated) habitat data.

get_restorable_habitat(): Retrieve the restorable habitat (aggregated) data.

get_settings(): Retrieve the settings of a restopt problem.